jip pipe [–help]
This command can be used to quickly construct pipelines from the command line.
For example:
jip pipe -i myfile.txt -c 'bash("cat ${input}", input=input) | bash("wc -l")'
| -P <profile>, --profile <profile> | |
| Select a job profile for resubmission | |
| -t <time>, --time <time> | |
| Max wallclock time for the job | |
| -q <queue>, --queue <queue> | |
| Job queue | |
| -p <priority>, --priority <priority> | |
| Job priority | |
| -A <account>, --account <account> | |
| The account to use for submission | |
| -C <threads>, --threads <cpus> | |
| Number of CPU’s assigned to the job | |
| -m <mem>, --mem <mem> | |
| Max memory assigned to the job | |
| -n <name>, --name <name> | |
| Job name | |
| -R <reload>, --reload | |
| Reload and rerender the job command | |
| -E <err>, --log <err> | |
| Jobs stderr log file | |
| -O <out>, --out <out> | |
| Jobs stdout log file | |
| -s, --submit | Submit as job to the cluster |
| --hold | Put job on hold after submission |
| --keep | Keep output also in case of failure |
| --dry | Show a dry run |
| --show | Show the command that will be executed |
| --force | Force execution/submission |
| -i <input>, --input <input> | |
| Single file input [default: stdin] | |
-I <inputs>, –inputs <inputs>... List of files as input -s, –submit Submit as job to the cluster -h, –help Show this help message