Examples

This chapter covers a set of practical examples that demonstrate certain parts of the JIP system.

The example described here, and more, can be found in the JIP GitHub repository.

• BWA example pipeline
  • Single script implementation
  • Python module implementation
• Dynamic Validation
• Argument filters and Streams
  • Other interpreters
  • Argument filtering
  • Dispatching streams
• Modify the execution environment
  • The Profile